It can advise which mods are being used with which saved game.Saved games can be cleaned if mods are removed (otherwise saved games can become unstable or fail to load altogether).Mod Organizer can also filter saved games based on profile You can also have different mods running in different profiles.
Instead of being installed all together in the game folder, they are installed in their own folders to allow mods to be uninstalled quickly and cleanly
It offers many features unavailable in Nexus Mod Manager, including: